GeneSetPage.java

/**
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership.
 *
 * This is free software; you can redistribute it and/or modify it
 * under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2.1 of
 * the License, or (at your option) any later version.
 *
 * This software is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this software; if not, write to the Free
 * Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
 * 02110-1301 USA, or see the FSF site: http://www.fsf.org.
 */
package org.ut.biolab.medsavant.client.geneset;

import javax.swing.JPanel;
import javax.swing.JPopupMenu;

import org.ut.biolab.medsavant.MedSavantClient;
import org.ut.biolab.medsavant.client.view.login.LoginController;
import org.ut.biolab.medsavant.shared.model.GeneSet;
import org.ut.biolab.medsavant.shared.serverapi.GeneSetManagerAdapter;
import org.ut.biolab.medsavant.client.util.GeneFetcher;
import org.ut.biolab.medsavant.client.util.MedSavantWorker;
import org.ut.biolab.medsavant.client.view.list.DetailedListEditor;
import org.ut.biolab.medsavant.client.view.list.DetailedTableView;
import org.ut.biolab.medsavant.client.view.list.SimpleDetailedListModel;
import org.ut.biolab.medsavant.client.view.list.SplitScreenView;
import org.ut.biolab.medsavant.client.view.app.MultiSectionApp;
import org.ut.biolab.medsavant.client.view.app.AppSubSection;


/**
 *
 * @author tarkvara
 */
public class GeneSetPage extends AppSubSection {

    private SplitScreenView view;
    private final GeneSetManagerAdapter manager;

    public GeneSetPage(MultiSectionApp parent) {
        super(parent, "Standard Gene Sets");
        manager = MedSavantClient.GeneSetManager;
    }

    @Override
    public JPanel getView() {
        if (view == null) {
            view = new SplitScreenView(
                    new SimpleDetailedListModel<GeneSet>("Gene Sets") {
                        @Override
                        public GeneSet[] getData() throws Exception {
                            return manager.getGeneSets(LoginController.getSessionID());
                        }
                    },
                    new GenesDetailedView(),
                    new DetailedListEditor());
        }
        return view;
    }

    public void update(){
        view.refresh();
    }

    private class GenesDetailedView extends DetailedTableView<GeneSet> {

        public GenesDetailedView() {
            super(pageName, "", "Multiple gene sets (%d)", new String[] { "Name", "Chromosome", "Start", "End", "Coding Start", "Coding End" });
        }
         
        @Override
        public MedSavantWorker createWorker() {
            return new GeneFetcher(selected.get(0), pageName) {
                @Override
                public void setData(Object[][] data) {
                    GenesDetailedView.this.setData(data);
                }

                /**
                 * Don't have progress bar handy, so we don't do anything to show progress.
                 */
                @Override
                public void showProgress(double prog) {
                }
            };
        }
    }
}