PathwaysPlugin.java

/*
 *    Copyright 2011 University of Toronto
 *
 *    Licensed under the Apache License, Version 2.0 (the "License");
 *    you may not use this file except in compliance with the License.
 *    You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0
 *
 *    Unless required by applicable law or agreed to in writing, software
 *    distributed under the License is distributed on an "AS IS" BASIS,
 *    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *    See the License for the specific language governing permissions and
 *    limitations under the License.
 */

package medsavant.wikipathways.app;

import java.util.HashMap;
import java.util.Map;
import javax.swing.JPanel;


/**
 * Filter plugin which lets us use the WikiPathways site to select genes for filtering.
 *
 * @author AndrewBrook
 */
public class PathwaysPlugin {
    private Map<Integer, FilterInstance> instances = new HashMap<Integer, FilterInstance>();

    /**
     * Create the user-interface which appears within the panel.
     *
     * @param host provided by MedSavant to host our plugin
     *
    @Override
    public void init(JPanel panel, int queryID) {
        instances.put(queryID, new FilterInstance(panel, queryID));
    }

    /**
     * Clean up when we know this instance of the plugin is no longer needed.
     *
    public void cleanup(int queryID) {
        instances.get(queryID).cleanup();
        instances.remove(queryID);
    }

    /**
     * Title under which this filter will appear in MedSavant's filter section.
     *
    @Override
    public String getTitle() {
        return "WikiPathways";
    }

    @Override
    public FilterStateAdapter saveState(int queryId) {

        FilterInstance instance = instances.get(queryId);

        Map<String, String> map = new HashMap<String, String>();
        if(instance.isFilterApplied()){
            map.put("pathway", instance.getPathwayName());
        }

        return new FilterStateAdapter(this, map);
    }

    @Override
    public void loadState(Map<String, String> values, int queryId) {

        String pathway = values.get("pathway");
        if(pathway == null) return;

        FilterInstance instance = instances.get(queryId);
        instance.goToPathwayAndApply(pathway);

    }
    */
}